Pisapia C, Hennige SJ, Haapkylä J, Matteucci R, Smith DJ (2012) Morphological changes in polyp structure of massive coral species in clear and turbid waters. Bulletin of Marine Science, 88(1): 183-191

Smith DJ (2012) A plea for science that informs policy rather than politicised science. Ocean Challenge, 19: 25

Mansell PJ, Suggett DJ, Smith DJ (2012) Management of marine resources; combining industry and research. Journal of Marine Biological Association of the United Kingdom, 92(4): 643-646

Green B, Smith DJ, Underwood GJC (2012) Habitat connectivity and spatial complexity differentially affect mangrove and salt marsh fish assemblages. Marine Ecology Progress Series, 466: 177-192

Dabruzzi TF, Sutton MA, Bennett WA (2012) Metabolic thermal sensitivity optimizes sea krait amphibious physiology. Herpetologica, 68(2): 218-225

Ahmadia GN, Sheard LJ, Pezold FL, Smith DJ (2012) Cryptobenthic fish assemblages across the coral reef-seagrass continuum in SE Sulawesi, Indonesia. Aquatic Biology, 16(2): 125-135

Ahmadia GN, Pezold FL, Smith DJ (2012) Cryptobenthic fish biodiversity and microhabitat use in healthy and degraded coral reefs in SE Sulawesi, Indonesia. Marine Biodiversity, 42(4): 433-442

Turner LM & Wilson NG (2012) The Chelidonura tsurugensis–sandrana (Gastropoda: Cephalaspidea) species complex: do reproductive decisions maintain colour polymorphism? Journal of Molluscan Studies 78: 166–172.

McKew BA, Dumbrell AJ, Daud SD, Hepburn L, Thorpe E, Mogensen L, Whitby C (2012) Characterization of Geographically Distinct Bacterial Communities Associated with Coral Mucus Produced by Acropora spp. and Porites spp. Applied Environmental Microbiology 78: 5229-5237

Ahmadia G, Turner JA, Smith DJ (2012) Habitat associations of Damselfish in reefs of varying quality in the Wakatobi Marine National Park. Journal of Indonesia Coral Reefs 1: 184-197

Cookson LJ, Cragg SM, Hendy IW (2012) Wood-boring limnoriids (Crustacea, Isopoda) including a new species from mangrove forests of the Tukang Besi Archipelago, Indonesia. Zootaxa 3248: 25–34

Hoeksema BW (2012) Forever in the dark: the cave-dwelling azooxanthellate reef coral Leptoseris troglodyta sp. n. (Scleractinia, Agariciidae). Zookeys 228: 21–37

Suggett DJ, Smith DJ (2011) Interpreting the sign of coral bleaching as friend versus foe. Global Change Biology, 17(1): 45-55

Salinas de León P, Costales Carrera A, Zeljkovic S, Smith DJ, Bell JJ (2011) Scleractinian settlement patterns to natural cleared reef substrata and artificial settlement panels on an Indonesian coral reef. Estuarine, Coastal and Shelf Science, 93(1): 80-85

Eme J, Dabruzzi TF, Bennett WA (2011) Thermal responses of juvenile squaretail mullet (Liza vaigiensis) and juvenile crescent terapon (Terapon jarbua) acclimated at near-lethal temperatures, and the implications for climate change. Journal of Experimental Marine Biology and Ecology, 399(1): 35-38

Dabruzzi TF, Wygoda ML, Wright JE, Eme J, Bennett WA (2011) Direct evidence of cutaneous resistance to evaporative water loss in amphibious mudskipper (family Gobiidae) and rockskipper (family Blenniidae) fishes from Pulau Hoga, southeast Sulawesi, Indonesia. Journal of Experimental Marine Biology and Ecology, 406(1-2): 125-129

Cullen-Unsworth LC, Pretty J, Smith DJ (2011) Developing community-derived indicators of economic status in the Coral Triangle: a management support tool. Ocean and Coastal Management, 54(6): 446-454

Clifton J, Majors C (2011) Culture, conservation, and conflict: perspectives on marine protection among the Bajau of Southeast Asia. Society and Natural Resources, 25(7): 716-725

Brading P, Warner ME, Davey P, Smith DJ, Aketburg EP, Suggett DJ (2011) Differential effects of ocean acidification on growth and photosynthesis among phylotypes of Symbiodinium (Dinophyceae). Limnology and Oceanography, 56(3): 927-938

Barnes RSK, Ellwood MDF (2011) Macrobenthic assemblage structure in a cool-temperate intertidal dwarf-eelgrass bed in comparison to those in lower latitudes. Biological Journal of the Linnean Society, 104(3): 527-540